treewide: Run refresh on all packages

The crude loop I wrote to come up with this changeset:

  find -L package/feeds/packages/ -name patches | \
  sed 's/patches$/refresh/' | sort | xargs make

Signed-off-by: Ilya Lipnitskiy <ilya.lipnitskiy@gmail.com>

lang/python/python-augeas/patches/001-backport-ffi-fix.patch

@@ -24,11 +24,9 @@ Closes https://github.com/hercules-team/python-augeas/issues/48.
  setup.py           |  1 +
  3 files changed, 24 insertions(+), 6 deletions(-)
 
-diff --git a/augeas/__init__.py b/augeas/__init__.py
-index 0fc0d96..4af0200 100644
 --- a/augeas/__init__.py
 +++ b/augeas/__init__.py
-@@ -32,7 +32,7 @@
+@@ -32,7 +32,7 @@ format and the transformation into a tre
  
  from sys import version_info as _pyver
  
@@ -37,8 +35,6 @@ index 0fc0d96..4af0200 100644
  
  __author__ = "Nathaniel McCallum <nathaniel@natemccallum.com>"
  __credits__ = """Jeff Schroeder <jeffschroeder@computer.org>
-diff --git a/augeas/ffi.py b/augeas/ffi.py
-index fdd8d1c..98b3175 100644
 --- a/augeas/ffi.py
 +++ b/augeas/ffi.py
 @@ -1,9 +1,28 @@
@@ -73,7 +69,7 @@ index fdd8d1c..98b3175 100644
  
  ffi.cdef("""
  typedef struct augeas augeas;
-@@ -59,7 +78,5 @@
+@@ -44,7 +63,5 @@ const char *aug_error_details(augeas *au
  void free(void *);
  """)
  
@@ -81,11 +77,9 @@ index fdd8d1c..98b3175 100644
 -
  if __name__ == "__main__":
      ffi.compile(verbose=True)
-diff --git a/setup.py b/setup.py
-index 65026c1..6c4265e 100755
 --- a/setup.py
 +++ b/setup.py
-@@ -22,6 +22,7 @@
+@@ -22,6 +22,7 @@ setup(name=name,
        setup_requires=["cffi>=1.0.0"],
        cffi_modules=["augeas/ffi.py:ffi"],
        install_requires=["cffi>=1.0.0"],